Software

SAW: https://github.com/STOmics/SAW
ST_BarcodeMap: https://github.com/STOmics/ST_BarcodeMap
HandleBam: https://github.com/STOmics/handleBam
GEM3D_toolkit: https://github.com/BGI-Qingdao/GEM3D_toolkit
Scaled cell-type compositions: https://github.com/saezlab/visium_heart

Database

GITomicsDB: https://db.cngb.org/stomics/GITomicsDB

CNGBdb

CNGBdb: https://db.cngb.org/search/project/CNP0007851 Raw data are available in CNP0007851.

Source Code: https://github.com/BGI-Qingdao/GITomicsDB_project

Stereo-seq Protocol: https://db.cngb.org/stomics/mosta/stereo.seq/

Contact

guolidong@genomics.cn

lilei2@genomics.cn

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